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| Registros recuperados: 43 | |
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| Duarte,Tonya Azevedo; Nery,Joilda Silva; Boechat,Neio; Pereira,Susan Martins; Simonsen,Vera; Oliveira,Martha; Gomes,Maria Gabriela Miranda; Penha-Gonçalves,Carlos; Barreto,Mauricio Lima; Barbosa,Theolis. |
| ABSTRACT Introduction: The Mycobacterium tuberculosis East African-Indian (EAI) spoligotyping family (belonging to lineage 1, Indo-Oceanic, defined by the region of deletion RD239) is distributed worldwide, but is more prevalent in Southeast Asia, India, and East Africa. Studies in Latin America have rarely identified EAI. In this study, we describe the occurrence of the EAI family in Brazil. Methods: EAI was identified in a systematic literature review of genetic diversity studies pertaining to M. tuberculosis in Brazil, as well as in a survey conducted in Salvador, Bahia, located in the northeastern region of this country. Results: The EAI6-BGD1 spoligotyping family and the EAI5 Spoligotype International Type (SIT) 1983 clade were the most frequently... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Mycobacterium tuberculosis; Phylogeography; Genotyping; Epidemiology. |
| Ano: 2017 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1413-86702017000300317 |
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| Durand, Lucile; Roumagnac, Marie; Cueff-gauchard, Valerie; Jan, Cyrielle; Guri, Mathieu; Tessier, Claire; Haond, Marine; Crassous, Philippe; Zbinden, Magali; Arnaud-haond, Sophie; Cambon-bonavita, Marie-anne. |
| Rimicaris exoculata is a deep-sea hydrothermal vent shrimp which enlarged gill chamber houses a complex trophic epibiotic community. Its gut harbours an autochthonous and distinct microbial community. This species dominates hydrothermal ecosystems megafauna along the Mid-Atlantic Ridge, regardless of contrasted geochemical conditions prevailing in them. Here, the resident gut epibiont community at four contrasted hydrothermal vent sites (Rainbow/TAG/Logatchev/Ashadze) was analysed and compiled with previous data to evaluate the possible influence of site location, using 16S rRNA surveys and microscopic observations (TEM, SEM and FISH analyses). Filamentous epibionts inserted between the epithelial cells microvilli were observed on all examined samples.... |
| Tipo: Text |
Palavras-chave: Epibiont; Extreme environments; Network analyses; Phylogeography. |
| Ano: 2015 |
URL: http://archimer.ifremer.fr/doc/00288/39890/38443.pdf |
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| Jacquot, Maude; Nomikou, Kyriaki; Palmarini, Massimo; Mertens, Peter; Biek, Roman. |
| Spatio-temporal patterns of the spread of infectious diseases are commonly driven by environmental and ecological factors. This is particularly true for vector-borne diseases because vector populations can be strongly affected by host distribution as well as by climatic and landscape variables. Here, we aim to identify environmental drivers for bluetongue virus (BTV), the causative agent of a major vector-borne disease of ruminants that has emerged multiple times in Europe in recent decades. In order to determine the importance of climatic, landscape and host-related factors affecting BTV diffusion across Europe, we fitted different phylogeographic models to a dataset of 113 time-stamped and geo-referenced BTV genomes, representing multiple strains and... |
| Tipo: Text |
Palavras-chave: Bluetongue; Phylogeography; Viral diffusion; Environmental drivers; Predictor testing; Vector-borne pathogen. |
| Ano: 2017 |
URL: https://archimer.ifremer.fr/doc/00667/77880/80026.pdf |
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| Gottschling, M.; Hilger, H.H.. |
| Ehretia (Ehretiaceae, Boraginales) has been divided into two major clades, characterised by fruits with four endocarpids (Ehretia I, including species of Ehretia formerly belonging to Rotula) and by fruits with two endocarpids (Ehretia II, plus E. microphylla (= Carmona retusa) with an undivided endocarp), respectively. Both molecular (ITS1) and morphological data support the recognition of an additional clade, Ehretia III (E. longiflora species group). Its representatives are characterised by four endocarpids (as in Ehretia I), but differ in the presence of distinct lamellae on the abaxial surface of each endocarpid (as in Bourreria, also belonging to Ehretiaceae). However, molecular data suggest a close relationship with Ehretia II. At least three... |
| Tipo: Article / Letter to the editor |
Palavras-chave: Ehretia longiflora; Anatomy; Fruit; ITS1; Molecular systematics; Phylogeny; Phylogeography. |
| Ano: 2004 |
URL: http://www.repository.naturalis.nl/record/525580 |
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| Hemery, Lenaig G.; Ameziane, Nadia; Eleaume, Marc. |
| This circumpolar dataset of the comatulid (Echinodermata: Crinoidea) Promachocrinus kerguelensis (Carpenter, 1888) from the Southern Ocean, documents biodiversity associated with the specimens sequenced in Hemery et al. (2012). The aim of Hemery et al. (2012) paper was to use phylogeographic and phylogenetic tools to assess the genetic diversity, demographic history and evolutionary relationships of this very common and abundant comatulid, in the context of the glacial history of the Antarctic and Sub-Antarctic shelves (Thatje et al. 2005, 2008). Over one thousand three hundred specimens (1307) used in this study were collected during seventeen cruises from 1996 to 2010, in eight regions of the Southern Ocean: Kerguelen Plateau, Davis Sea, Dumont d'Urville... |
| Tipo: Text |
Palavras-chave: Antarctica; Crinoidea; Cytochrome Oxydase subunit I; Echinodermata; Phylogeography; Promachocrinus; Southern Ocean; Sub-Antarctic. |
| Ano: 2013 |
URL: https://archimer.ifremer.fr/doc/00296/40758/39749.pdf |
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| Lapegue, Sylvie; Batista, Frederico; Heurtebise, Serge; Yu, Ziniu; Boudry, Pierre. |
| The Pacific oyster, Crassostrea gigas (Thunberg), and the Portuguese oyster, C. angulata (Lamarck), are two closely related taxa. Although these two taxa were both introduced from Asia into Europe. one (C. gigas) was voluntarily introduced in the early 1970s, whereas the other (C. angulata) was presumed to be present in Europe for at least four centuries, but nearly disappeared because of disease. Few C. angulata populations remained in southern Portugal, Spain and Morocco and their putative origin was traced in Taiwan. The present paper reports evidence for its presence in Northern China. We reanalyzed recently published mitochondrial cytochrome oxidase C subunit I (COI) sequence data from presumed Dalianwan oysters (C. talienwhanensis) and compared them... |
| Tipo: Text |
Palavras-chave: Phylogeography; Cytochrome oxidase C subunit 1 gene; Crassostrea talienwhanensis; Gigas; Crosstrea; Crassostrea angulata; Cupped oysters. |
| Ano: 2004 |
URL: https://archimer.ifremer.fr/doc/2004/publication-3173.pdf |
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| Dering, Monika; Sekiewicz, Katarzyna; Boratynska, Krystyna; Litkowiec, Monika; Iszkulo, Gregorz; Romo, Angel; Boratynski, Adam. |
| Several Abies species are currently present in the Mediterranean region and most of them are endemic taxa and tertiary relicts. Using six nuclear microsatellites, we studied the genetic structure and interspecific relationships among West Mediterranean firs, A. pinsapo (Spain), A. maroccana and A. tazaotana (Morocco). Based on the hypothesis that A. pinsapo could historically exchange genes with A. alba growing in the Pyrenees via secondary contact, we investigated the level of genetic admixture between these species using a Bayesian approach. The studied populations showed moderate genetic diversity (mean H-E=0.598) and a high level of genetic differentiation (F-ST=0.225) that was especially pronounced between A. alba and the African firs. All populations... |
| Tipo: Text |
Palavras-chave: A. pinsapo; A. alba; Genetic diversity; Phylogeography; Gibraltar Strait; West Mediterranean firs. |
| Ano: 2014 |
URL: https://archimer.ifremer.fr/doc/00291/40224/82999.pdf |
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| Maia,André V.P.; Almeida,Cícero; Santoro,Kleber R.; Melo,João L.A.; Oliveira,José V.; Guedes,Raul N.C.; Badji,César A.. |
| ABSTRACT Neoleucinodes elegantalis is an important tomato pest in Brazil, occurring throughout the country and resulting in economic losses in agriculture. In several species, biogeographic studies in Brazil indicate the structuring of populations, following the refuge model, with a split between the populations of the northeast and the southeast regions of Brazil. The objective of this work was to analyze the phylogeography of N. elegantalis in Brazil, understanding its population structure and the demographic patterns. Larvae were collected from eight locations throughout Brazil, and the mitochondrial cytochrome c oxidase subunit 1 gene was analyzed. A total of 628 bp in 51 individuals were obtained, showing 12 haplotypes with a haplotype diversity of... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Insect pest; Phylogeography; Small tomato borer. |
| Ano: 2016 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0085-56262016000300206 |
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| Lemaire, Christophe; Versini, J; Bonhomme, Francois. |
| To investigate the origin and maintenance of the genetic discontinuity between Atlantic and Mediterranean populations of the common sea bass (Dicentrarchus labrax) we analysed the genetic variation at a fragment of mitochondrial cytochrome b sequence for 18 population samples. The result were also compared with new or previously published microsatellite data. Seven mitochondrial haplotypes and an average nucleotidic divergence of 0.02 between Atlantic and Mediterranean populations that matches a Pleistocene allopatric isolation were found. The frequency variation at the cytochrome b locus was many times greater between Atlantic and Mediterranean populations ((θ) over cap (C) = 0.67) than at microsatellite loci ((θ) over cap (N) = 0.02).... |
| Tipo: Text |
Palavras-chave: Reproductive isolation; Phylogeography; MtDNA; Microsatellites; Genetic transitions. |
| Ano: 2005 |
URL: http://archimer.ifremer.fr/doc/2005/publication-776.pdf |
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| Huvet, Arnaud; Lapegue, Sylvie; Magoulas, A; Boudry, Pierre. |
| The respective status of the Portuguese oyster, Crassostrea angulata, and the Pacific oyster, Crassostrea gigas, has long been a matter of controversy. Morphological and physiological similarities, homogeneity of allozyme allelic frequencies between populations of the two taxa and the demonstration of hybridization lead most authors to suggest that they should be regrouped within the same species. The risk of introgression and the present expansion of C. gigas aquaculture in Europe raises the question of the need for preservation of C. angulata in Europe, as only a few populations remain. We studied European and Asian populations of C. gigas and C. angulata using microsatellite and mitochondrial DNA markers to estimate their genetic diversity and... |
| Tipo: Text |
Palavras-chave: Phylogeography; Population genetics; Microsatellites; Crassostrea gigas; Crassostrea angulata. |
| Ano: 2000 |
URL: https://archimer.ifremer.fr/doc/2000/publication-707.pdf |
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| Boudry, Pierre; Huvet, Arnaud. |
| The taxonomic status of Crassostrea angulata and Crassostrea gigas has long been a matter of controversy. Morphological and physiological similarities, as well as homogeneity in allelic frequencies on allozymes between the populations of the two taxa, lead most authors to suggest to regroup of the two within the same species. European and Asian populations of C. gigas and C. angulata have been studied using microsatellite and mitochondrial DNA markers. The analysis of genetic distances and the distribution of allelic and haplotype frequencies revealed a differentiation between the populations of C. gigas and C. angulata. The data allowed the construction of Neighbor-joining trees for each of the two types of markers. Similar topologies appeared with data... |
| Tipo: Text |
Palavras-chave: Mitochondrial DNA; Nuclear DNA; Phylogeography; Crassostrea angulata; Crassostrea gigas; Genetic; Oyster. |
| Ano: 1999 |
URL: http://archimer.ifremer.fr/doc/1999/acte-3434.pdf |
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| Registros recuperados: 43 | |
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